iC10 - A Copy Number and Expression-Based Classifier for Breast Tumours
Implementation of the classifier described in the paper Ali HR et al (2014) <doi:10.1186/s13059-014-0431-1>. It uses copy number and/or expression form breast cancer data, trains a Tibshirani's 'pamr' classifier with the features available and predicts the iC10 group.
Last updated 8 months ago
2.94 score 4 dependents 12 scripts 515 downloadsiC10TrainingData - Training Datasets for iC10 Package
Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.
Last updated 8 months ago
2.18 score 5 dependents 7 scripts 577 downloads