Package: iC10TrainingData 2.0.1
iC10TrainingData: Training Datasets for iC10 Package
Training datasets for iC10; which implements the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group. Genomic annotation for the training dataset has been obtained from Mark Dunning's lluminaHumanv3.db package.
Authors:
iC10TrainingData_2.0.1.tar.gz
iC10TrainingData_2.0.1.zip(r-4.5)iC10TrainingData_2.0.1.zip(r-4.4)iC10TrainingData_2.0.1.zip(r-4.3)
iC10TrainingData_2.0.1.tgz(r-4.4-any)iC10TrainingData_2.0.1.tgz(r-4.3-any)
iC10TrainingData_2.0.1.tar.gz(r-4.5-noble)iC10TrainingData_2.0.1.tar.gz(r-4.4-noble)
iC10TrainingData_2.0.1.tgz(r-4.4-emscripten)iC10TrainingData_2.0.1.tgz(r-4.3-emscripten)
iC10TrainingData.pdf |iC10TrainingData.html✨
iC10TrainingData/json (API)
| # Install 'iC10TrainingData' in R: |
| install.packages('iC10TrainingData', repos = c('https://rueda-lab.r-universe.dev', 'https://cloud.r-project.org')) |
- IntClustMemb - Class Membership for the training set
- Map.All - Probe mapping of the complete set of features of the training set
- Map.CN - Probe mapping of the copy number features of the training set.
- Map.Exp - Probe mapping of the Expression features of the training set
- train.CN - Copy number data for the training set
- train.Exp - Expression data for the training set.
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:1e41b8cc14. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 16 2024 |
| R-4.5-win | OK | Sep 16 2024 |
| R-4.5-linux | OK | Sep 16 2024 |
| R-4.4-win | OK | Sep 16 2024 |
| R-4.4-mac | OK | Sep 16 2024 |
| R-4.3-win | OK | Sep 16 2024 |
| R-4.3-mac | OK | Sep 16 2024 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Training Datasets for iC10 Package | iC10TrainingData-package iC10TrainingData |
| Class Membership for the training set | IntClustMemb |
| Probe mapping of the complete set of features of the training set | Map.All |
| Probe mapping of the copy number features of the training set. | Map.CN |
| Probe mapping of the Expression features of the training set | Map.Exp |
| Copy number data for the training set | train.CN |
| Expression data for the training set. | train.Exp |
